diff --git a/arch/arm/mach-at91/Makefile b/arch/arm/mach-at91/Makefile
index 3b0a9538093c..e0fda04e6aa1 100644
--- a/arch/arm/mach-at91/Makefile
+++ b/arch/arm/mach-at91/Makefile
@@ -2,7 +2,7 @@
 # Makefile for the linux kernel.
 #
 
-obj-y		:= irq.o gpio.o setup.o
+obj-y		:= irq.o gpio.o setup.o sysirq_mask.o
 obj-m		:=
 obj-n		:=
 obj-		:=
diff --git a/arch/arm/mach-at91/at91sam9260.c b/arch/arm/mach-at91/at91sam9260.c
index 5de6074b4f4f..ae10d14de700 100644
--- a/arch/arm/mach-at91/at91sam9260.c
+++ b/arch/arm/mach-at91/at91sam9260.c
@@ -349,6 +349,8 @@ static void __init at91sam9260_initialize(void)
 	arm_pm_idle = at91sam9_idle;
 	arm_pm_restart = at91sam9_alt_restart;
 
+	at91_sysirq_mask_rtt(AT91SAM9260_BASE_RTT);
+
 	/* Register GPIO subsystem */
 	at91_gpio_init(at91sam9260_gpio, 3);
 }
diff --git a/arch/arm/mach-at91/at91sam9261.c b/arch/arm/mach-at91/at91sam9261.c
index 0e0793241ab7..e761e74ac64b 100644
--- a/arch/arm/mach-at91/at91sam9261.c
+++ b/arch/arm/mach-at91/at91sam9261.c
@@ -291,6 +291,8 @@ static void __init at91sam9261_initialize(void)
 	arm_pm_idle = at91sam9_idle;
 	arm_pm_restart = at91sam9_alt_restart;
 
+	at91_sysirq_mask_rtt(AT91SAM9261_BASE_RTT);
+
 	/* Register GPIO subsystem */
 	at91_gpio_init(at91sam9261_gpio, 3);
 }
diff --git a/arch/arm/mach-at91/at91sam9263.c b/arch/arm/mach-at91/at91sam9263.c
index 6ce7d1850893..e6fed6253a7f 100644
--- a/arch/arm/mach-at91/at91sam9263.c
+++ b/arch/arm/mach-at91/at91sam9263.c
@@ -328,6 +328,9 @@ static void __init at91sam9263_initialize(void)
 	arm_pm_idle = at91sam9_idle;
 	arm_pm_restart = at91sam9_alt_restart;
 
+	at91_sysirq_mask_rtt(AT91SAM9263_BASE_RTT0);
+	at91_sysirq_mask_rtt(AT91SAM9263_BASE_RTT1);
+
 	/* Register GPIO subsystem */
 	at91_gpio_init(at91sam9263_gpio, 5);
 }
diff --git a/arch/arm/mach-at91/at91sam9g45.c b/arch/arm/mach-at91/at91sam9g45.c
index 474ee04d24b9..9f7a97c84c12 100644
--- a/arch/arm/mach-at91/at91sam9g45.c
+++ b/arch/arm/mach-at91/at91sam9g45.c
@@ -377,6 +377,9 @@ static void __init at91sam9g45_initialize(void)
 	arm_pm_idle = at91sam9_idle;
 	arm_pm_restart = at91sam9g45_restart;
 
+	at91_sysirq_mask_rtc(AT91SAM9G45_BASE_RTC);
+	at91_sysirq_mask_rtt(AT91SAM9G45_BASE_RTT);
+
 	/* Register GPIO subsystem */
 	at91_gpio_init(at91sam9g45_gpio, 5);
 }
diff --git a/arch/arm/mach-at91/at91sam9n12.c b/arch/arm/mach-at91/at91sam9n12.c
index 2d895a297739..388ec3aec4b9 100644
--- a/arch/arm/mach-at91/at91sam9n12.c
+++ b/arch/arm/mach-at91/at91sam9n12.c
@@ -224,7 +224,13 @@ static void __init at91sam9n12_map_io(void)
 	at91_init_sram(0, AT91SAM9N12_SRAM_BASE, AT91SAM9N12_SRAM_SIZE);
 }
 
+static void __init at91sam9n12_initialize(void)
+{
+	at91_sysirq_mask_rtc(AT91SAM9N12_BASE_RTC);
+}
+
 AT91_SOC_START(at91sam9n12)
 	.map_io = at91sam9n12_map_io,
 	.register_clocks = at91sam9n12_register_clocks,
+	.init = at91sam9n12_initialize,
 AT91_SOC_END
diff --git a/arch/arm/mach-at91/at91sam9rl.c b/arch/arm/mach-at91/at91sam9rl.c
index d4ec0d9a9872..301e1728d353 100644
--- a/arch/arm/mach-at91/at91sam9rl.c
+++ b/arch/arm/mach-at91/at91sam9rl.c
@@ -294,6 +294,9 @@ static void __init at91sam9rl_initialize(void)
 	arm_pm_idle = at91sam9_idle;
 	arm_pm_restart = at91sam9_alt_restart;
 
+	at91_sysirq_mask_rtc(AT91SAM9RL_BASE_RTC);
+	at91_sysirq_mask_rtt(AT91SAM9RL_BASE_RTT);
+
 	/* Register GPIO subsystem */
 	at91_gpio_init(at91sam9rl_gpio, 4);
 }
diff --git a/arch/arm/mach-at91/at91sam9x5.c b/arch/arm/mach-at91/at91sam9x5.c
index 916e5a142917..e8a2e075a1b8 100644
--- a/arch/arm/mach-at91/at91sam9x5.c
+++ b/arch/arm/mach-at91/at91sam9x5.c
@@ -322,6 +322,11 @@ static void __init at91sam9x5_map_io(void)
 	at91_init_sram(0, AT91SAM9X5_SRAM_BASE, AT91SAM9X5_SRAM_SIZE);
 }
 
+static void __init at91sam9x5_initialize(void)
+{
+	at91_sysirq_mask_rtc(AT91SAM9X5_BASE_RTC);
+}
+
 /* --------------------------------------------------------------------
  *  Interrupt initialization
  * -------------------------------------------------------------------- */
@@ -329,4 +334,5 @@ static void __init at91sam9x5_map_io(void)
 AT91_SOC_START(at91sam9x5)
 	.map_io = at91sam9x5_map_io,
 	.register_clocks = at91sam9x5_register_clocks,
+	.init = at91sam9x5_initialize,
 AT91_SOC_END
diff --git a/arch/arm/mach-at91/generic.h b/arch/arm/mach-at91/generic.h
index dc6e2f5f804d..26dee3ce9397 100644
--- a/arch/arm/mach-at91/generic.h
+++ b/arch/arm/mach-at91/generic.h
@@ -34,6 +34,8 @@ extern int  __init at91_aic_of_init(struct device_node *node,
 				    struct device_node *parent);
 extern int  __init at91_aic5_of_init(struct device_node *node,
 				    struct device_node *parent);
+extern void __init at91_sysirq_mask_rtc(u32 rtc_base);
+extern void __init at91_sysirq_mask_rtt(u32 rtt_base);
 
 
  /* Timer */
diff --git a/arch/arm/mach-at91/include/mach/at91sam9n12.h b/arch/arm/mach-at91/include/mach/at91sam9n12.h
index d374b87c0459..0151bcf6163c 100644
--- a/arch/arm/mach-at91/include/mach/at91sam9n12.h
+++ b/arch/arm/mach-at91/include/mach/at91sam9n12.h
@@ -48,6 +48,11 @@
 #define AT91SAM9N12_BASE_USART2	0xf8024000
 #define AT91SAM9N12_BASE_USART3	0xf8028000
 
+/*
+ * System Peripherals
+ */
+#define AT91SAM9N12_BASE_RTC	0xfffffeb0
+
 /*
  * Internal Memory.
  */
diff --git a/arch/arm/mach-at91/include/mach/at91sam9x5.h b/arch/arm/mach-at91/include/mach/at91sam9x5.h
index c75ee19b58d3..2fc76c49e97c 100644
--- a/arch/arm/mach-at91/include/mach/at91sam9x5.h
+++ b/arch/arm/mach-at91/include/mach/at91sam9x5.h
@@ -54,6 +54,11 @@
 #define AT91SAM9X5_BASE_USART1	0xf8020000
 #define AT91SAM9X5_BASE_USART2	0xf8024000
 
+/*
+ * System Peripherals
+ */
+#define AT91SAM9X5_BASE_RTC	0xfffffeb0
+
 /*
  * Internal Memory.
  */
diff --git a/arch/arm/mach-at91/include/mach/sama5d3.h b/arch/arm/mach-at91/include/mach/sama5d3.h
index 31096a8aaf1d..25613d8c6dcd 100644
--- a/arch/arm/mach-at91/include/mach/sama5d3.h
+++ b/arch/arm/mach-at91/include/mach/sama5d3.h
@@ -72,6 +72,11 @@
 #define SAMA5D3_BASE_USART2	0xf8020000
 #define SAMA5D3_BASE_USART3	0xf8024000
 
+/*
+ * System Peripherals
+ */
+#define SAMA5D3_BASE_RTC	0xfffffeb0
+
 /*
  * Internal Memory
  */
diff --git a/arch/arm/mach-at91/sama5d3.c b/arch/arm/mach-at91/sama5d3.c
index 401279715ab1..3ea86428ee09 100644
--- a/arch/arm/mach-at91/sama5d3.c
+++ b/arch/arm/mach-at91/sama5d3.c
@@ -371,7 +371,13 @@ static void __init sama5d3_map_io(void)
 	at91_init_sram(0, SAMA5D3_SRAM_BASE, SAMA5D3_SRAM_SIZE);
 }
 
+static void __init sama5d3_initialize(void)
+{
+	at91_sysirq_mask_rtc(SAMA5D3_BASE_RTC);
+}
+
 AT91_SOC_START(sama5d3)
 	.map_io = sama5d3_map_io,
 	.register_clocks = sama5d3_register_clocks,
+	.init = sama5d3_initialize,
 AT91_SOC_END
diff --git a/arch/arm/mach-at91/sysirq_mask.c b/arch/arm/mach-at91/sysirq_mask.c
new file mode 100644
index 000000000000..2ba694f9626b
--- /dev/null
+++ b/arch/arm/mach-at91/sysirq_mask.c
@@ -0,0 +1,71 @@
+/*
+ * sysirq_mask.c - System-interrupt masking
+ *
+ * Copyright (C) 2013 Johan Hovold <jhovold@gmail.com>
+ *
+ * Functions to disable system interrupts from backup-powered peripherals.
+ *
+ * The RTC and RTT-peripherals are generally powered by backup power (VDDBU)
+ * and are not reset on wake-up, user, watchdog or software reset. This means
+ * that their interrupts may be enabled during early boot (e.g. after a user
+ * reset).
+ *
+ * As the RTC and RTT share the system-interrupt line with the PIT, an
+ * interrupt occurring before a handler has been installed would lead to the
+ * system interrupt being disabled and prevent the system from booting.
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 2 of the License, or
+ * (at your option) any later version.
+ */
+
+#include <linux/io.h>
+#include <mach/at91_rtt.h>
+
+#include "generic.h"
+
+#define AT91_RTC_IDR	0x24	/* Interrupt Disable Register */
+#define AT91_RTC_IMR	0x28	/* Interrupt Mask Register */
+
+void __init at91_sysirq_mask_rtc(u32 rtc_base)
+{
+	void __iomem *base;
+	u32 mask;
+
+	base = ioremap(rtc_base, 64);
+	if (!base)
+		return;
+
+	mask = readl_relaxed(base + AT91_RTC_IMR);
+	if (mask) {
+		pr_info("AT91: Disabling rtc irq\n");
+		writel_relaxed(mask, base + AT91_RTC_IDR);
+		(void)readl_relaxed(base + AT91_RTC_IMR);	/* flush */
+	}
+
+	iounmap(base);
+}
+
+void __init at91_sysirq_mask_rtt(u32 rtt_base)
+{
+	void __iomem *base;
+	void __iomem *reg;
+	u32 mode;
+
+	base = ioremap(rtt_base, 16);
+	if (!base)
+		return;
+
+	reg = base + AT91_RTT_MR;
+
+	mode = readl_relaxed(reg);
+	if (mode & (AT91_RTT_ALMIEN | AT91_RTT_RTTINCIEN)) {
+		pr_info("AT91: Disabling rtt irq\n");
+		mode &= ~(AT91_RTT_ALMIEN | AT91_RTT_RTTINCIEN);
+		writel_relaxed(mode, reg);
+		(void)readl_relaxed(reg);			/* flush */
+	}
+
+	iounmap(base);
+}