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Signed-off-by: Mrunal Patel <mrunalp@gmail.com>
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Mrunal Patel 2017-01-31 16:45:59 -08:00
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# Spark example
Following this example, you will create a functional [Apache
Spark](http://spark.apache.org/) cluster using Kubernetes and
[Docker](http://docker.io).
You will setup a Spark master service and a set of Spark workers using Spark's [standalone mode](http://spark.apache.org/docs/latest/spark-standalone.html).
For the impatient expert, jump straight to the [tl;dr](#tldr)
section.
### Sources
The Docker images are heavily based on https://github.com/mattf/docker-spark.
And are curated in https://github.com/kubernetes/application-images/tree/master/spark
The Spark UI Proxy is taken from https://github.com/aseigneurin/spark-ui-proxy.
The PySpark examples are taken from http://stackoverflow.com/questions/4114167/checking-if-a-number-is-a-prime-number-in-python/27946768#27946768
## Step Zero: Prerequisites
This example assumes
- You have a Kubernetes cluster installed and running.
- That you have installed the ```kubectl``` command line tool installed in your path and configured to talk to your Kubernetes cluster
- That your Kubernetes cluster is running [kube-dns](../../build/kube-dns/) or an equivalent integration.
Optionally, your Kubernetes cluster should be configured with a Loadbalancer integration (automatically configured via kube-up or GKE)
## Step One: Create namespace
```sh
$ kubectl create -f examples/spark/namespace-spark-cluster.yaml
```
Now list all namespaces:
```sh
$ kubectl get namespaces
NAME LABELS STATUS
default <none> Active
spark-cluster name=spark-cluster Active
```
To configure kubectl to work with our namespace, we will create a new context using our current context as a base:
```sh
$ CURRENT_CONTEXT=$(kubectl config view -o jsonpath='{.current-context}')
$ USER_NAME=$(kubectl config view -o jsonpath='{.contexts[?(@.name == "'"${CURRENT_CONTEXT}"'")].context.user}')
$ CLUSTER_NAME=$(kubectl config view -o jsonpath='{.contexts[?(@.name == "'"${CURRENT_CONTEXT}"'")].context.cluster}')
$ kubectl config set-context spark --namespace=spark-cluster --cluster=${CLUSTER_NAME} --user=${USER_NAME}
$ kubectl config use-context spark
```
## Step Two: Start your Master service
The Master [service](../../docs/user-guide/services.md) is the master service
for a Spark cluster.
Use the
[`examples/spark/spark-master-controller.yaml`](spark-master-controller.yaml)
file to create a
[replication controller](../../docs/user-guide/replication-controller.md)
running the Spark Master service.
```console
$ kubectl create -f examples/spark/spark-master-controller.yaml
replicationcontroller "spark-master-controller" created
```
Then, use the
[`examples/spark/spark-master-service.yaml`](spark-master-service.yaml) file to
create a logical service endpoint that Spark workers can use to access the
Master pod:
```console
$ kubectl create -f examples/spark/spark-master-service.yaml
service "spark-master" created
```
### Check to see if Master is running and accessible
```console
$ kubectl get pods
NAME READY STATUS RESTARTS AGE
spark-master-controller-5u0q5 1/1 Running 0 8m
```
Check logs to see the status of the master. (Use the pod retrieved from the previous output.)
```sh
$ kubectl logs spark-master-controller-5u0q5
starting org.apache.spark.deploy.master.Master, logging to /opt/spark-1.5.1-bin-hadoop2.6/sbin/../logs/spark--org.apache.spark.deploy.master.Master-1-spark-master-controller-g0oao.out
Spark Command: /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java -cp /opt/spark-1.5.1-bin-hadoop2.6/sbin/../conf/:/opt/spark-1.5.1-bin-hadoop2.6/lib/spark-assembly-1.5.1-hadoop2.6.0.jar:/opt/spark-1.5.1-bin-hadoop2.6/lib/datanucleus-rdbms-3.2.9.jar:/opt/spark-1.5.1-bin-hadoop2.6/lib/datanucleus-core-3.2.10.jar:/opt/spark-1.5.1-bin-hadoop2.6/lib/datanucleus-api-jdo-3.2.6.jar -Xms1g -Xmx1g org.apache.spark.deploy.master.Master --ip spark-master --port 7077 --webui-port 8080
========================================
15/10/27 21:25:05 INFO Master: Registered signal handlers for [TERM, HUP, INT]
15/10/27 21:25:05 INFO SecurityManager: Changing view acls to: root
15/10/27 21:25:05 INFO SecurityManager: Changing modify acls to: root
15/10/27 21:25:05 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(root); users with modify permissions: Set(root)
15/10/27 21:25:06 INFO Slf4jLogger: Slf4jLogger started
15/10/27 21:25:06 INFO Remoting: Starting remoting
15/10/27 21:25:06 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkMaster@spark-master:7077]
15/10/27 21:25:06 INFO Utils: Successfully started service 'sparkMaster' on port 7077.
15/10/27 21:25:07 INFO Master: Starting Spark master at spark://spark-master:7077
15/10/27 21:25:07 INFO Master: Running Spark version 1.5.1
15/10/27 21:25:07 INFO Utils: Successfully started service 'MasterUI' on port 8080.
15/10/27 21:25:07 INFO MasterWebUI: Started MasterWebUI at http://spark-master:8080
15/10/27 21:25:07 INFO Utils: Successfully started service on port 6066.
15/10/27 21:25:07 INFO StandaloneRestServer: Started REST server for submitting applications on port 6066
15/10/27 21:25:07 INFO Master: I have been elected leader! New state: ALIVE
```
Once the master is started, we'll want to check the Spark WebUI. In order to access the Spark WebUI, we will deploy a [specialized proxy](https://github.com/aseigneurin/spark-ui-proxy). This proxy is neccessary to access worker logs from the Spark UI.
Deploy the proxy controller with [`examples/spark/spark-ui-proxy-controller.yaml`](spark-ui-proxy-controller.yaml):
```console
$ kubectl create -f examples/spark/spark-ui-proxy-controller.yaml
replicationcontroller "spark-ui-proxy-controller" created
```
We'll also need a corresponding Loadbalanced service for our Spark Proxy [`examples/spark/spark-ui-proxy-service.yaml`](spark-ui-proxy-service.yaml):
```console
$ kubectl create -f examples/spark/spark-ui-proxy-service.yaml
service "spark-ui-proxy" created
```
After creating the service, you should eventually get a loadbalanced endpoint:
```console
$ kubectl get svc spark-ui-proxy -o wide
NAME CLUSTER-IP EXTERNAL-IP PORT(S) AGE SELECTOR
spark-ui-proxy 10.0.51.107 aad59283284d611e6839606c214502b5-833417581.us-east-1.elb.amazonaws.com 80/TCP 9m component=spark-ui-proxy
```
The Spark UI in the above example output will be available at http://aad59283284d611e6839606c214502b5-833417581.us-east-1.elb.amazonaws.com
If your Kubernetes cluster is not equipped with a Loadbalancer integration, you will need to use the [kubectl proxy](../../docs/user-guide/accessing-the-cluster.md#using-kubectl-proxy) to
connect to the Spark WebUI:
```console
kubectl proxy --port=8001
```
At which point the UI will be available at
[http://localhost:8001/api/v1/proxy/namespaces/spark-cluster/services/spark-master:8080/](http://localhost:8001/api/v1/proxy/namespaces/spark-cluster/services/spark-master:8080/).
## Step Three: Start your Spark workers
The Spark workers do the heavy lifting in a Spark cluster. They
provide execution resources and data cache capabilities for your
program.
The Spark workers need the Master service to be running.
Use the [`examples/spark/spark-worker-controller.yaml`](spark-worker-controller.yaml) file to create a
[replication controller](../../docs/user-guide/replication-controller.md) that manages the worker pods.
```console
$ kubectl create -f examples/spark/spark-worker-controller.yaml
replicationcontroller "spark-worker-controller" created
```
### Check to see if the workers are running
If you launched the Spark WebUI, your workers should just appear in the UI when
they're ready. (It may take a little bit to pull the images and launch the
pods.) You can also interrogate the status in the following way:
```console
$ kubectl get pods
NAME READY STATUS RESTARTS AGE
spark-master-controller-5u0q5 1/1 Running 0 25m
spark-worker-controller-e8otp 1/1 Running 0 6m
spark-worker-controller-fiivl 1/1 Running 0 6m
spark-worker-controller-ytc7o 1/1 Running 0 6m
$ kubectl logs spark-master-controller-5u0q5
[...]
15/10/26 18:20:14 INFO Master: Registering worker 10.244.1.13:53567 with 2 cores, 6.3 GB RAM
15/10/26 18:20:14 INFO Master: Registering worker 10.244.2.7:46195 with 2 cores, 6.3 GB RAM
15/10/26 18:20:14 INFO Master: Registering worker 10.244.3.8:39926 with 2 cores, 6.3 GB RAM
```
## Step Four: Start the Zeppelin UI to launch jobs on your Spark cluster
The Zeppelin UI pod can be used to launch jobs into the Spark cluster either via
a web notebook frontend or the traditional Spark command line. See
[Zeppelin](https://zeppelin.incubator.apache.org/) and
[Spark architecture](https://spark.apache.org/docs/latest/cluster-overview.html)
for more details.
Deploy Zeppelin:
```console
$ kubectl create -f examples/spark/zeppelin-controller.yaml
replicationcontroller "zeppelin-controller" created
```
And the corresponding service:
```console
$ kubectl create -f examples/spark/zeppelin-service.yaml
service "zeppelin" created
```
Zeppelin needs the spark-master service to be running.
### Check to see if Zeppelin is running
```console
$ kubectl get pods -l component=zeppelin
NAME READY STATUS RESTARTS AGE
zeppelin-controller-ja09s 1/1 Running 0 53s
```
## Step Five: Do something with the cluster
Now you have two choices, depending on your predilections. You can do something
graphical with the Spark cluster, or you can stay in the CLI.
For both choices, we will be working with this Python snippet:
```python
from math import sqrt; from itertools import count, islice
def isprime(n):
return n > 1 and all(n%i for i in islice(count(2), int(sqrt(n)-1)))
nums = sc.parallelize(xrange(10000000))
print nums.filter(isprime).count()
```
### Do something fast with pyspark!
Simply copy and paste the python snippet into pyspark from within the zeppelin pod:
```console
$ kubectl exec zeppelin-controller-ja09s -it pyspark
Python 2.7.9 (default, Mar 1 2015, 12:57:24)
[GCC 4.9.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/__ / .__/\_,_/_/ /_/\_\ version 1.5.1
/_/
Using Python version 2.7.9 (default, Mar 1 2015 12:57:24)
SparkContext available as sc, HiveContext available as sqlContext.
>>> from math import sqrt; from itertools import count, islice
>>>
>>> def isprime(n):
... return n > 1 and all(n%i for i in islice(count(2), int(sqrt(n)-1)))
...
>>> nums = sc.parallelize(xrange(10000000))
>>> print nums.filter(isprime).count()
664579
```
Congratulations, you now know how many prime numbers there are within the first 10 million numbers!
### Do something graphical and shiny!
Creating the Zeppelin service should have yielded you a Loadbalancer endpoint:
```console
$ kubectl get svc zeppelin -o wide
NAME CLUSTER-IP EXTERNAL-IP PORT(S) AGE SELECTOR
zeppelin 10.0.154.1 a596f143884da11e6839506c114532b5-121893930.us-east-1.elb.amazonaws.com 80/TCP 3m component=zeppelin
```
If your Kubernetes cluster does not have a Loadbalancer integration, then we will have to use port forwarding.
Take the Zeppelin pod from before and port-forward the WebUI port:
```console
$ kubectl port-forward zeppelin-controller-ja09s 8080:8080
```
This forwards `localhost` 8080 to container port 8080. You can then find
Zeppelin at [http://localhost:8080/](http://localhost:8080/).
Once you've loaded up the Zeppelin UI, create a "New Notebook". In there we will paste our python snippet, but we need to add a `%pyspark` hint for Zeppelin to understand it:
```
%pyspark
from math import sqrt; from itertools import count, islice
def isprime(n):
return n > 1 and all(n%i for i in islice(count(2), int(sqrt(n)-1)))
nums = sc.parallelize(xrange(10000000))
print nums.filter(isprime).count()
```
After pasting in our code, press shift+enter or click the play icon to the right of our snippet. The Spark job will run and once again we'll have our result!
## Result
You now have services and replication controllers for the Spark master, Spark
workers and Spark driver. You can take this example to the next step and start
using the Apache Spark cluster you just created, see
[Spark documentation](https://spark.apache.org/documentation.html) for more
information.
## tl;dr
```console
kubectl create -f examples/spark
```
After it's setup:
```console
kubectl get pods # Make sure everything is running
kubectl get svc -o wide # Get the Loadbalancer endpoints for spark-ui-proxy and zeppelin
```
At which point the Master UI and Zeppelin will be available at the URLs under the `EXTERNAL-IP` field.
You can also interact with the Spark cluster using the traditional `spark-shell` /
`spark-subsubmit` / `pyspark` commands by using `kubectl exec` against the
`zeppelin-controller` pod.
If your Kubernetes cluster does not have a Loadbalancer integration, use `kubectl proxy` and `kubectl port-forward` to access the Spark UI and Zeppelin.
For Spark UI:
```console
kubectl proxy --port=8001
```
Then visit [http://localhost:8001/api/v1/proxy/namespaces/spark-cluster/services/spark-ui-proxy/](http://localhost:8001/api/v1/proxy/namespaces/spark-cluster/services/spark-ui-proxy/).
For Zeppelin:
```console
kubectl port-forward zeppelin-controller-abc123 8080:8080 &
```
Then visit [http://localhost:8080/](http://localhost:8080/).
## Known Issues With Spark
* This provides a Spark configuration that is restricted to the cluster network,
meaning the Spark master is only available as a cluster service. If you need
to submit jobs using external client other than Zeppelin or `spark-submit` on
the `zeppelin` pod, you will need to provide a way for your clients to get to
the
[`examples/spark/spark-master-service.yaml`](spark-master-service.yaml). See
[Services](../../docs/user-guide/services.md) for more information.
## Known Issues With Zeppelin
* The Zeppelin pod is large, so it may take a while to pull depending on your
network. The size of the Zeppelin pod is something we're working on, see issue #17231.
* Zeppelin may take some time (about a minute) on this pipeline the first time
you run it. It seems to take considerable time to load.
* On GKE, `kubectl port-forward` may not be stable over long periods of time. If
you see Zeppelin go into `Disconnected` state (there will be a red dot on the
top right as well), the `port-forward` probably failed and needs to be
restarted. See #12179.
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apiVersion: v1
kind: Namespace
metadata:
name: "spark-cluster"
labels:
name: "spark-cluster"

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# Spark on GlusterFS example
This guide is an extension of the standard [Spark on Kubernetes Guide](../../../examples/spark/) and describes how to run Spark on GlusterFS using the [Kubernetes Volume Plugin for GlusterFS](../../../examples/volumes/glusterfs/)
The setup is the same in that you will setup a Spark Master Service in the same way you do with the standard Spark guide but you will deploy a modified Spark Master and a Modified Spark Worker ReplicationController, as they will be modified to use the GlusterFS volume plugin to mount a GlusterFS volume into the Spark Master and Spark Workers containers. Note that this example can be used as a guide for implementing any of the Kubernetes Volume Plugins with the Spark Example.
[There is also a video available that provides a walkthrough for how to set this solution up](https://youtu.be/xyIaoM0-gM0)
## Step Zero: Prerequisites
This example assumes that you have been able to successfully get the standard Spark Example working in Kubernetes and that you have a GlusterFS cluster that is accessible from your Kubernetes cluster. It is also recommended that you are familiar with the GlusterFS Volume Plugin and how to configure it.
## Step One: Define the endpoints for your GlusterFS Cluster
Modify the `examples/spark/spark-gluster/glusterfs-endpoints.yaml` file to list the IP addresses of some of the servers in your GlusterFS cluster. The GlusterFS Volume Plugin uses these IP addresses to perform a Fuse Mount of the GlusterFS Volume into the Spark Worker Containers that are launched by the ReplicationController in the next section.
Register your endpoints by running the following command:
```console
$ kubectl create -f examples/spark/spark-gluster/glusterfs-endpoints.yaml
```
## Step Two: Modify and Submit your Spark Master ReplicationController
Modify the `examples/spark/spark-gluster/spark-master-controller.yaml` file to reflect the GlusterFS Volume that you wish to use in the PATH parameter of the volumes subsection.
Submit the Spark Master Pod
```console
$ kubectl create -f examples/spark/spark-gluster/spark-master-controller.yaml
```
Verify that the Spark Master Pod deployed successfully.
```console
$ kubectl get pods
```
Submit the Spark Master Service
```console
$ kubectl create -f examples/spark/spark-gluster/spark-master-service.yaml
```
Verify that the Spark Master Service deployed successfully.
```console
$ kubectl get services
```
## Step Three: Start your Spark workers
Modify the `examples/spark/spark-gluster/spark-worker-controller.yaml` file to reflect the GlusterFS Volume that you wish to use in the PATH parameter of the Volumes subsection.
Make sure that the replication factor for the pods is not greater than the amount of Kubernetes nodes available in your Kubernetes cluster.
Submit your Spark Worker ReplicationController by running the following command:
```console
$ kubectl create -f examples/spark/spark-gluster/spark-worker-controller.yaml
```
Verify that the Spark Worker ReplicationController deployed its pods successfully.
```console
$ kubectl get pods
```
Follow the steps from the standard example to verify the Spark Worker pods have registered successfully with the Spark Master.
## Step Four: Submit a Spark Job
All the Spark Workers and the Spark Master in your cluster have a mount to GlusterFS. This means that any of them can be used as the Spark Client to submit a job. For simplicity, lets use the Spark Master as an example.
The Spark Worker and Spark Master containers include a setup_client utility script that takes two parameters, the Service IP of the Spark Master and the port that it is running on. This must be to setup the container as a Spark client prior to submitting any Spark Jobs.
Obtain the Service IP (listed as IP:) and Full Pod Name by running
```console
$ kubectl describe pod spark-master-controller
```
Now we will shell into the Spark Master Container and run a Spark Job. In the example below, we are running the Spark Wordcount example and specifying the input and output directory at the location where GlusterFS is mounted in the Spark Master Container. This will submit the job to the Spark Master who will distribute the work to all the Spark Worker Containers.
All the Spark Worker containers will be able to access the data as they all have the same GlusterFS volume mounted at /mnt/glusterfs. The reason we are submitting the job from a Spark Worker and not an additional Spark Base container (as in the standard Spark Example) is due to the fact that the Spark instance submitting the job must be able to access the data. Only the Spark Master and Spark Worker containers have GlusterFS mounted.
The Spark Worker and Spark Master containers include a setup_client utility script that takes two parameters, the Service IP of the Spark Master and the port that it is running on. This must be done to setup the container as a Spark client prior to submitting any Spark Jobs.
Shell into the Master Spark Node (spark-master-controller) by running
```console
kubectl exec spark-master-controller-<ID> -i -t -- bash -i
root@spark-master-controller-c1sqd:/# . /setup_client.sh <Service IP> 7077
root@spark-master-controller-c1sqd:/# pyspark
Python 2.7.9 (default, Mar 1 2015, 12:57:24)
[GCC 4.9.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
15/06/26 14:25:28 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/__ / .__/\_,_/_/ /_/\_\ version 1.4.0
/_/
Using Python version 2.7.9 (default, Mar 1 2015 12:57:24)
SparkContext available as sc, HiveContext available as sqlContext.
>>> file = sc.textFile("/mnt/glusterfs/somefile.txt")
>>> counts = file.flatMap(lambda line: line.split(" ")).map(lambda word: (word, 1)).reduceByKey(lambda a, b: a + b)
>>> counts.saveAsTextFile("/mnt/glusterfs/output")
```
While still in the container, you can see the output of your Spark Job in the Distributed File System by running the following:
```console
root@spark-master-controller-c1sqd:/# ls -l /mnt/glusterfs/output
```
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kind: Endpoints
apiVersion: v1
metadata:
name: glusterfs-cluster
namespace: spark-cluster
subsets:
- addresses:
- ip: 192.168.30.104
ports:
- port: 1
- addresses:
- ip: 192.168.30.105
ports:
- port: 1

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kind: ReplicationController
apiVersion: v1
metadata:
name: spark-master-controller
namespace: spark-cluster
labels:
component: spark-master
spec:
replicas: 1
selector:
component: spark-master
template:
metadata:
labels:
component: spark-master
spec:
containers:
- name: spark-master
image: gcr.io/google_containers/spark:1.5.2_v1
command: ["/start-master"]
ports:
- containerPort: 7077
volumeMounts:
- mountPath: /mnt/glusterfs
name: glusterfsvol
resources:
requests:
cpu: 100m
volumes:
- name: glusterfsvol
glusterfs:
endpoints: glusterfs-cluster
path: MyVolume
readOnly: false

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kind: Service
apiVersion: v1
metadata:
name: spark-master
namespace: spark-cluster
labels:
component: spark-master-service
spec:
ports:
- port: 7077
targetPort: 7077
selector:
component: spark-master

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kind: ReplicationController
apiVersion: v1
metadata:
name: spark-gluster-worker-controller
namespace: spark-cluster
labels:
component: spark-worker
spec:
replicas: 2
selector:
component: spark-worker
template:
metadata:
labels:
component: spark-worker
uses: spark-master
spec:
containers:
- name: spark-worker
image: gcr.io/google_containers/spark:1.5.2_v1
command: ["/start-worker"]
ports:
- containerPort: 8888
volumeMounts:
- mountPath: /mnt/glusterfs
name: glusterfsvol
resources:
requests:
cpu: 100m
volumes:
- name: glusterfsvol
glusterfs:
endpoints: glusterfs-cluster
path: MyVolume
readOnly: false

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kind: ReplicationController
apiVersion: v1
metadata:
name: spark-master-controller
spec:
replicas: 1
selector:
component: spark-master
template:
metadata:
labels:
component: spark-master
spec:
containers:
- name: spark-master
image: gcr.io/google_containers/spark:1.5.2_v1
command: ["/start-master"]
ports:
- containerPort: 7077
- containerPort: 8080
resources:
requests:
cpu: 100m

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kind: Service
apiVersion: v1
metadata:
name: spark-master
spec:
ports:
- port: 7077
targetPort: 7077
name: spark
- port: 8080
targetPort: 8080
name: http
selector:
component: spark-master

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kind: ReplicationController
apiVersion: v1
metadata:
name: spark-ui-proxy-controller
spec:
replicas: 1
selector:
component: spark-ui-proxy
template:
metadata:
labels:
component: spark-ui-proxy
spec:
containers:
- name: spark-ui-proxy
image: elsonrodriguez/spark-ui-proxy:1.0
ports:
- containerPort: 80
resources:
requests:
cpu: 100m
args:
- spark-master:8080
livenessProbe:
httpGet:
path: /
port: 80
initialDelaySeconds: 120
timeoutSeconds: 5

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kind: Service
apiVersion: v1
metadata:
name: spark-ui-proxy
spec:
ports:
- port: 80
targetPort: 80
selector:
component: spark-ui-proxy
type: LoadBalancer

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kind: ReplicationController
apiVersion: v1
metadata:
name: spark-worker-controller
spec:
replicas: 2
selector:
component: spark-worker
template:
metadata:
labels:
component: spark-worker
spec:
containers:
- name: spark-worker
image: gcr.io/google_containers/spark:1.5.2_v1
command: ["/start-worker"]
ports:
- containerPort: 8081
resources:
requests:
cpu: 100m

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kind: ReplicationController
apiVersion: v1
metadata:
name: zeppelin-controller
spec:
replicas: 1
selector:
component: zeppelin
template:
metadata:
labels:
component: zeppelin
spec:
containers:
- name: zeppelin
image: gcr.io/google_containers/zeppelin:v0.5.6_v1
ports:
- containerPort: 8080
resources:
requests:
cpu: 100m

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@ -0,0 +1,11 @@
kind: Service
apiVersion: v1
metadata:
name: zeppelin
spec:
ports:
- port: 80
targetPort: 8080
selector:
component: zeppelin
type: LoadBalancer